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Solexa
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Broad Institute Inc
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Image Search Results
Journal: Frontiers in Plant Science
Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning
doi: 10.3389/fpls.2023.1184112
Figure Lengend Snippet: Experimental assembly comparison.
Article Snippet: Step 4 scaffolded the assemblies to the corresponding
Techniques: Comparison, Software
Journal: Frontiers in Plant Science
Article Title: Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning
doi: 10.3389/fpls.2023.1184112
Figure Lengend Snippet: Haplotype switching. Haplotype switching was illustrated by aligning TrioCanu binned HiFi reads of parent A (HDA149) and parent B (HDA330) to each contig level genome assembly. The x-axis shows 1 Mb windows across contigs. The contigs were arranged from longest to shortest. Vertical gray lines show the boundaries of contigs. The y-axis shows the difference in percent coverage of the binned reads over a 1 Mb window of the given assembly. Higher coverage of HDA149 is shown in pink and higher coverage of HDA330 is shown in blue. (A) Hifiasm HDA149 assembly with trio-binning. (B) Hifiasm HDA330 assembly with trio-binning. (C) TrioCanu HDA149 assembly with trio-binning. (D) TrioCanu HDA330 assembly with trio-binning. (E) Hifiasm haplotype 1 assembly in default run mode, without parental k-mers for trio-binning. (F) Hifiasm haplotype 2 assembly in default run mode, without parental k-mers for trio-binning.
Article Snippet: Step 4 scaffolded the assemblies to the corresponding
Techniques: